Command line

Requirements

You will need Java 21 (jdk or jre) to run this tool.

Download

Download executable jar WDL2Nextflow.jar at https://github.com/genespace-ru/workflow-engine.

Usage

• To convert WDL to Nextflow:

java -jar WDL2Nextflow.jar <PATH_TO_WDL>

Where <PATH_TO_WDL> is path to the WDL file. It will create file with the same name as <PATH_TO_WDL> with extension .nf.

• To generate visual diagram:

java -jar WDL2Nextflow.jar <PATH_TO_WDL> -i

Where <PATH_TO_WDL> is path to the WDL file. It will create image file with the same name as <PATH_TO_WDL> with extension .png.